HL_5LZV_054

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

5LZV|1|5|A|3642, 5LZV|1|5|A|3643, 5LZV|1|5|U|3644, 5LZV|1|5|A|3648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZV_054 not in the Motif Atlas

Homologous match to HL_8C3A_046

Geometric discrepancy: 0.2027

The information below is about HL_8C3A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

5LZV|1|5|U|3639
5LZV|1|5|U|3640
5LZV|1|5|U|3641
5LZV|1|5|A|3642
5LZV|1|5|A|3643
5LZV|1|5|U|3644
5LZV|1|5|U|3645
5LZV|1|5|A|3646
5LZV|1|5|A|3647
5LZV|1|5|A|3648
5LZV|1|5|A|3649

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 1

Nascent chain

Chain A

uL2

Chain j

eL37