HL_5LZV_058

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

5LZV|1|5|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZV_058 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.0986

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

5LZV|1|5|U|3796
5LZV|1|5|C|3797
5LZV|1|5|U|3798
5LZV|1|5|A|3799
5LZV|1|5|A|3800
5LZV|1|5|U|3801
5LZV|1|5|U|3802
5LZV|1|5|A|3803
5LZV|1|5|G|3804

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain V

uL14

Chain ii

eRF1(AAQ)