HL_8C3A_050

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases (A, C, G, U)

2276U

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.2

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

8C3A|1|1|U|2270
8C3A|1|1|C|2271
8C3A|1|1|U|2272
8C3A|1|1|A|2273
8C3A|1|1|A|2274
8C3A|1|1|U|2275
8C3A|1|1|U|2276
8C3A|1|1|A|2277
8C3A|1|1|G|2278

Current chains

Chain 1

25S

Nearby chains

Chain 6

60S ribosomal protein L23-A

Chain B

Small subunit ribosomal RNA; SSU rRNA