HL_5LZV_108

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

5LZV|1|9|A|1253

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZV_108 not in the Motif Atlas

Homologous match to HL_4V88_212

Geometric discrepancy: 0.1131

The information below is about HL_4V88_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5LZV|1|9|G|1245
5LZV|1|9|A|1246
5LZV|1|9|C|1247
5LZV|1|9|U|1248
5LZV|1|9|C|1249
5LZV|1|9|A|1250
5LZV|1|9|A|1251
5LZV|1|9|C|1252
5LZV|1|9|A|1253
5LZV|1|9|C|1254

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain QQ

uS9

Chain UU

uS10

Chain dd

uS14

Chain ii

eRF1(AAQ)