HL_5LZV_125

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

5LZV|1|9|U|1300, 5LZV|1|9|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZV_125 not in the Motif Atlas

Homologous match to HL_8C3A_218

Geometric discrepancy: 0.2053

The information below is about HL_8C3A_218

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_81538.1

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5LZV|1|9|A|1295
5LZV|1|9|U|1296
5LZV|1|9|U|1297
5LZV|1|9|G|1298
5LZV|1|9|A|1299
5LZV|1|9|U|1300
5LZV|1|9|A|1301
5LZV|1|9|G|1302
5LZV|1|9|C|1303
5LZV|1|9|U|1304

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain PP

uS19

Chain dd

uS14

Chain ff

eS31