Motif HL_81538.1 Version HL_81538.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4KQY_003 | 4KQY | 0.3723 | 1 | GNRA wlth tandem sheared | A | SAM-I riboswitch | C | 94 | U | 95 | C | 96 | G | 97 | A | 98 | A | 99 | C | 100 | G | 102 | cWW | ||
| 2 | HL_1E8O_001 | 1E8O | 0.2889 | 0 | GNRA wlth tandem sheared | E | 7SL RNA | G | 110 | G | 111 | U | 112 | G | 113 | G | 114 | C | 115 | G | 116 | C | 117 | cWW | ntSH | ntSHa |
| 3 | HL_5AOX_001 | 5AOX | 0.2584 | 0 | GNRA wlth tandem sheared | C | ALU JO CONSENSUS RNA | G | 11 | G | 12 | U | 13 | G | 14 | G | 15 | C | 16 | U | 17 | C | 18 | cWW | ntSH | |
| 4 | HL_4WF9_004 | 4WF9 | 0.2873 | 0 | GNRA wlth tandem sheared | X | LSU rRNA | A | 136 | G | 137 | U | 138 | U | 139 | A | 140 | U | 141 | G | 142 | U | 143 | cWW | ||
| 5 | HL_8P9A_140 | 8P9A | 0.1932 | 0 | GNRA wlth tandem sheared (H) | AR | LSU rRNA | U | 1267 | G | 1268 | U | 1269 | A | 1270 | A | 1271 | C | 1272 | A | 1273 | A | 1274 | cWW | tSH | ntSHa |
| 6 | HL_5D8H_002 | 5D8H | 0.1609 | 0 | GNRA wlth tandem sheared | A | LSU rRNA | C | 1202 | G | 1203 | U | 1204 | A | 1205 | A | 1206 | C | 1207 | A | 1208 | G | 1209 | cWW | tSH | |
| 7 | HL_6PRV_002 | 6PRV | 0.1693 | 0 | GNRA wlth tandem sheared | A | LSU rRNA | C | 1092 | G | 1093 | U | 1094 | A | 1095 | A | 1096 | U | 1097 | A | 1098 | G | 1099 | cWW | tSH | |
| 8 | HL_1MMS_002 | 1MMS | 0.1661 | 0 | GNRA wlth tandem sheared | C | 23S RIBOSOMAL RNA | C | 1092 | G | 1093 | U | 1094 | A | 1095 | A | 1096 | C | 1097 | A | 1098 | G | 1099 | cWW | tSH | ntSHa |
| 9 | HL_5J7L_154 | 5J7L | 0.0000 | 0 | GNRA wlth tandem sheared | DA | LSU rRNA | G | 712 | G | 713 | U | 714 | A | 715 | A | 716 | C | 717 | A | 718 | C | 719 | cWW | tSH | |
| 10 | HL_3HHN_010 | 3HHN | 0.2474 | 0 | GNRA wlth tandem sheared | E | Class I ligase ribozyme, self-ligation product | G | 92 | U | 93 | U | 94 | A | 95 | A | 96 | A | 97 | A | 98 | C | 99 | cWW | ntSH | |
| 11 | HL_9DFE_020 | 9DFE | 0.2657 | 0 | GNRA wlth tandem sheared (H) | 1A | LSU rRNA | G | 712 | G | 713 | U | 714 | G | 715 | A | 716 | G | 717 | A | 718 | C | 719 | cWW | ntSH | |
| 12 | HL_4V9F_043 | 4V9F | 0.3959 | 1 | GNRA wlth tandem sheared | 0 | LSU rRNA | C | 1705 | G | 1706 | G | 1707 | C | 1708 | G | 1709 | A | 1711 | A | 1712 | G | 1713 | cWW | tSH | ntSH |
| 13 | HL_5J7L_012 | 5J7L | 0.4101 | 1 | GNRA related | AA | SSU rRNA | G | 462 | U | 463 | U | 464 | A | 465 | A | 466 | A | 468 | C | 469 | C | 470 | cWW | ||
| 14 | HL_8C3A_218 | 8C3A | 0.3429 | 2 | Anticodon loop related | CM | SSU rRNA | A | 1223 | U | 1224 | U | 1225 | G | 1226 | A | 1227 | A | 1229 | C | 1231 | U | 1232 | cWW | ntsS | |
| 15 | HL_8P9A_216 | 8P9A | 0.3959 | 2 | Anticodon loop related (H) | sR | SSU rRNA | A | 1238 | U | 1239 | U | 1240 | G | 1241 | A | 1242 | A | 1244 | C | 1246 | U | 1247 | cWW | ntsS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUAACAG | 2 |
| AUUGAGAGCU | 2 |
| CUCGAACAG | 1 |
| GGUGGCGC | 1 |
| GGUGGCUC | 1 |
| AGUUAUGU | 1 |
| UGUAACAA | 1 |
| CGUAAUAG | 1 |
| GGUAACAC | 1 |
| GUUAAAAC | 1 |
| GGUGAGAC | 1 |
| CGGCGAAAG | 1 |
| GUUAAUACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAACA | 4 |
| UUGAGAGC | 2 |
| UCGAACA | 1 |
| GUGGCG | 1 |
| GUGGCU | 1 |
| GUUAUG | 1 |
| GUAAUA | 1 |
| UUAAAA | 1 |
| GUGAGA | 1 |
| GGCGAAA | 1 |
| UUAAUAC | 1 |
- Annotations
-
- GNRA wlth tandem sheared (10)
- GNRA wlth tandem sheared (H) (2)
- GNRA related (1)
- Anticodon loop related (1)
- Anticodon loop related (H) (1)
- Basepair signature
- cWW-tSH-F-F-F-F
- Heat map statistics
- Min 0.08 | Avg 0.34 | Max 0.63
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