HL_8C3A_218

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

8C3A|1|CM|G|1228, 8C3A|1|CM|G|1230

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53597.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

8C3A|1|CM|A|1223
8C3A|1|CM|U|1224
8C3A|1|CM|U|1225
8C3A|1|CM|G|1226
8C3A|1|CM|A|1227
8C3A|1|CM|G|1228
8C3A|1|CM|A|1229
8C3A|1|CM|G|1230
8C3A|1|CM|C|1231
8C3A|1|CM|U|1232

Current chains

Chain CM

18S

Nearby chains

Chain AS

Large subunit ribosomal RNA; LSU rRNA

Chain DC

40S ribosomal protein S15

Chain DQ

40S ribosomal protein S29A

Chain DS

Ubiquitin-40S ribosomal protein S31 fusion protein