HL_5LZW_102
3D structure
- PDB id
- 5LZW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.53 Å
Loop
- Sequence
- UAUUUUGUUGGUUUUCG
- Length
- 17 nucleotides
- Bulged bases
- 5LZW|1|9|U|890
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5LZW_102 not in the Motif Atlas
- Homologous match to HL_4V88_205
- Geometric discrepancy: 0.4813
- The information below is about HL_4V88_205
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_88364.1
- Basepair signature
- cWW-cWW-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5LZW|1|9|U|885
5LZW|1|9|A|886
5LZW|1|9|U|887
5LZW|1|9|U|888
5LZW|1|9|U|889
5LZW|1|9|U|890
5LZW|1|9|G|891
5LZW|1|9|U|892
5LZW|1|9|U|893
5LZW|1|9|G|894
5LZW|1|9|G|895
5LZW|1|9|U|896
5LZW|1|9|U|897
5LZW|1|9|U|898
5LZW|1|9|U|899
5LZW|1|9|C|900
5LZW|1|9|G|901
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain GG
- eS6
- Chain LL
- uS17
Coloring options: