HL_5LZX_028

3D structure

PDB id

5LZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

ACGUGCGAAU

Length

10 nucleotides

Bulged bases

5LZX|1|5|U|1596, 5LZX|1|5|A|1600, 5LZX|1|5|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZX_028 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0838

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

5LZX|1|5|A|1593
5LZX|1|5|C|1594
5LZX|1|5|G|1595
5LZX|1|5|U|1596
5LZX|1|5|G|1597
5LZX|1|5|C|1598
5LZX|1|5|G|1599
5LZX|1|5|A|1600
5LZX|1|5|A|1601
5LZX|1|5|U|1602

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ul3

Chain P

uL22

Chain j

Ribosomal protein L37