HL_5LZX_090

3D structure

PDB id

5LZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

5LZX|1|9|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZX_090 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.2407

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5LZX|1|9|G|288
5LZX|1|9|G|289
5LZX|1|9|U|290
5LZX|1|9|G|291
5LZX|1|9|A|292
5LZX|1|9|C|293
5LZX|1|9|U|294
5LZX|1|9|C|295

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain GG

40S ribosomal protein S6

Chain LL

uS17