HL_5LZX_109

3D structure

PDB id

5LZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

5LZX|1|9|A|1253

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZX_109 not in the Motif Atlas

Homologous match to HL_4V88_212

Geometric discrepancy: 0.1266

The information below is about HL_4V88_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5LZX|1|9|G|1245
5LZX|1|9|A|1246
5LZX|1|9|C|1247
5LZX|1|9|U|1248
5LZX|1|9|C|1249
5LZX|1|9|A|1250
5LZX|1|9|A|1251
5LZX|1|9|C|1252
5LZX|1|9|A|1253
5LZX|1|9|C|1254

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain QQ

uS9

Chain UU

uS10

Chain dd

uS14

Chain ii

Protein pelota homolog