HL_5LZY_030

3D structure

PDB id

5LZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

5LZY|1|5|C|1676, 5LZY|1|5|A|1679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZY_030 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.3377

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

5LZY|1|5|C|1675
5LZY|1|5|C|1676
5LZY|1|5|U|1677
5LZY|1|5|C|1678
5LZY|1|5|A|1679
5LZY|1|5|G|1680

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain a

uL15

Chain b

eL29

Chain o

eL42