HL_5LZY_051

3D structure

PDB id

5LZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

5LZY|1|5|C|2814

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZY_051 not in the Motif Atlas

Homologous match to HL_5TBW_042

Geometric discrepancy: 0.0739

The information below is about HL_5TBW_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5LZY|1|5|U|2810
5LZY|1|5|G|2811
5LZY|1|5|A|2812
5LZY|1|5|A|2813
5LZY|1|5|C|2814
5LZY|1|5|A|2815
5LZY|1|5|G|2816

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain R

eL19