HL_5LZY_062

3D structure

PDB id

5LZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

5LZY|1|5|A|4214, 5LZY|1|5|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZY_062 not in the Motif Atlas

Homologous match to HL_5TBW_055

Geometric discrepancy: 0.1307

The information below is about HL_5TBW_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

5LZY|1|5|U|4210
5LZY|1|5|C|4211
5LZY|1|5|A|4212
5LZY|1|5|A|4213
5LZY|1|5|A|4214
5LZY|1|5|C|4215
5LZY|1|5|G|4216
5LZY|1|5|G|4217
5LZY|1|5|U|4218
5LZY|1|5|A|4219
5LZY|1|5|A|4220
5LZY|1|5|C|4221
5LZY|1|5|G|4222

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain I

Ribosomal protein L10 (Predicted)

Chain T

eL21

Chain b

eL29