HL_5LZY_069

3D structure

PDB id

5LZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

5LZY|1|5|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZY_069 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.1143

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

5LZY|1|5|A|4474
5LZY|1|5|G|4475
5LZY|1|5|C|4476
5LZY|1|5|A|4477
5LZY|1|5|G|4478
5LZY|1|5|A|4479
5LZY|1|5|A|4480
5LZY|1|5|U|4481

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

uL6

Chain m

eL40