HL_5LZZ_032

3D structure

PDB id

5LZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CUGGUGUG

Length

8 nucleotides

Bulged bases

5LZZ|1|5|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZZ_032 not in the Motif Atlas

Geometric match to HL_5TBW_024

Geometric discrepancy: 0.3251

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5LZZ|1|5|C|1816
5LZZ|1|5|U|1817
5LZZ|1|5|G|1818
5LZZ|1|5|G|1819
5LZZ|1|5|U|1820
5LZZ|1|5|G|1821
5LZZ|1|5|U|1822
5LZZ|1|5|G|1823

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain T

eL21

Chain b

eL29