HL_5LZZ_036

3D structure

PDB id

5LZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZZ_036 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.205

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

5LZZ|1|5|U|2006
5LZZ|1|5|G|2007
5LZZ|1|5|U|2008
5LZZ|1|5|A|2009
5LZZ|1|5|A|2010
5LZZ|1|5|C|2011
5LZZ|1|5|A|2012
5LZZ|1|5|A|2013

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain ii

Protein pelota homolog

Chain t

uL11