HL_5M1J_006

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAUAG

Length

5 nucleotides

Bulged bases

5M1J|1|14|U|210, 5M1J|1|14|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_006 not in the Motif Atlas

Homologous match to HL_5TBW_006

Geometric discrepancy: 0.1692

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5M1J|1|14|C|208
5M1J|1|14|A|209
5M1J|1|14|U|210
5M1J|1|14|A|211
5M1J|1|14|G|212

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain C5

60S ribosomal protein L4-A

Chain Y5

60S ribosomal protein L26-A