HL_5M1J_007

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

5M1J|1|14|G|218, 5M1J|1|14|A|219, 5M1J|1|14|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_007 not in the Motif Atlas

Homologous match to HL_5TBW_007

Geometric discrepancy: 0.0977

The information below is about HL_5TBW_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

5M1J|1|14|G|216
5M1J|1|14|U|217
5M1J|1|14|G|218
5M1J|1|14|A|219
5M1J|1|14|G|220
5M1J|1|14|A|221
5M1J|1|14|A|222
5M1J|1|14|U|223
5M1J|1|14|C|224

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain 44

5.8S ribosomal RNA; 5.8S rRNA

Chain C5

60S ribosomal protein L4-A

Chain Y5

60S ribosomal protein L26-A