HL_5M1J_014

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

5M1J|1|14|C|648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_014 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.1052

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

5M1J|1|14|U|640
5M1J|1|14|C|641
5M1J|1|14|U|642
5M1J|1|14|U|643
5M1J|1|14|G|644
5M1J|1|14|A|645
5M1J|1|14|A|646
5M1J|1|14|A|647
5M1J|1|14|C|648
5M1J|1|14|A|649

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain B5

60S ribosomal protein L3

Chain a5

60S ribosomal protein L28

Chain e5

60S ribosomal protein L32