HL_5M1J_016
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UGAAAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5M1J_016 not in the Motif Atlas
- Homologous match to HL_5TBW_016
- Geometric discrepancy: 0.0798
- The information below is about HL_5TBW_016
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
5M1J|1|14|U|707
5M1J|1|14|G|708
5M1J|1|14|A|709
5M1J|1|14|A|710
5M1J|1|14|A|711
5M1J|1|14|G|712
Current chains
- Chain 14
- 25S ribosomal RNA
Nearby chains
- Chain L5
- 60S ribosomal protein L13-A
- Chain Q5
- 60S ribosomal protein L18-A
- Chain a5
- 60S ribosomal protein L28
- Chain i5
- 60S ribosomal protein L36-A
Coloring options: