HL_5M1J_019
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGAAAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5M1J_019 not in the Motif Atlas
- Homologous match to HL_8C3A_019
- Geometric discrepancy: 0.2468
- The information below is about HL_8C3A_019
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
5M1J|1|14|G|844
5M1J|1|14|G|845
5M1J|1|14|A|846
5M1J|1|14|A|847
5M1J|1|14|A|848
5M1J|1|14|C|849
Current chains
- Chain 14
- 25S ribosomal RNA
Nearby chains
- Chain 22
- Small subunit ribosomal RNA; SSU rRNA
- Chain L2
- 40S ribosomal protein S11-A
- Chain N2
- 40S ribosomal protein S13
- Chain p5
- 60S ribosomal protein L43-B
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