HL_5M1J_021

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

5M1J|1|14|A|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_021 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.1426

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5M1J|1|14|G|910
5M1J|1|14|C|911
5M1J|1|14|G|912
5M1J|1|14|A|913
5M1J|1|14|A|914
5M1J|1|14|A|915
5M1J|1|14|G|916
5M1J|1|14|A|917
5M1J|1|14|C|918

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain A5

60S ribosomal protein L2-A

Chain N5

60S ribosomal protein L15-A

Chain j5

60S ribosomal protein L37-A