HL_5M1J_022

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

5M1J|1|14|C|959, 5M1J|1|14|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_022 not in the Motif Atlas

Homologous match to HL_5TBW_022

Geometric discrepancy: 0.3507

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

5M1J|1|14|C|958
5M1J|1|14|C|959
5M1J|1|14|U|960
5M1J|1|14|C|961
5M1J|1|14|A|962
5M1J|1|14|G|963

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain a5

60S ribosomal protein L28

Chain b5

60S ribosomal protein L29

Chain o5

60S ribosomal protein L42-B