HL_5M1J_043

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

5M1J|1|14|U|1925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_043 not in the Motif Atlas

Geometric match to HL_7RQB_042

Geometric discrepancy: 0.1268

The information below is about HL_7RQB_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03562.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

56

Unit IDs

5M1J|1|14|C|1923
5M1J|1|14|U|1924
5M1J|1|14|U|1925
5M1J|1|14|C|1926
5M1J|1|14|G|1927
5M1J|1|14|G|1928

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain 22

Small subunit ribosomal RNA; SSU rRNA

Chain n5

60S ribosomal protein L41-B

Chain p5

60S ribosomal protein L43-B