HL_5M1J_051

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

5M1J|1|14|A|2372, 5M1J|1|14|A|2373, 5M1J|1|14|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_051 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.1464

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

5M1J|1|14|G|2369
5M1J|1|14|G|2370
5M1J|1|14|G|2371
5M1J|1|14|A|2372
5M1J|1|14|A|2373
5M1J|1|14|C|2374
5M1J|1|14|G|2375
5M1J|1|14|G|2376
5M1J|1|14|G|2377
5M1J|1|14|C|2378

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain B5

60S ribosomal protein L3

Chain e5

60S ribosomal protein L32

Chain f5

60S ribosomal protein L33-A