HL_5M1J_056

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUAAACGAUAACG

Length

13 nucleotides

Bulged bases

5M1J|1|14|A|2637, 5M1J|1|14|C|2644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_056 not in the Motif Atlas

Homologous match to HL_5TBW_055

Geometric discrepancy: 0.0883

The information below is about HL_5TBW_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

5M1J|1|14|U|2633
5M1J|1|14|U|2634
5M1J|1|14|A|2635
5M1J|1|14|A|2636
5M1J|1|14|A|2637
5M1J|1|14|C|2638
5M1J|1|14|G|2639
5M1J|1|14|A|2640
5M1J|1|14|U|2641
5M1J|1|14|A|2642
5M1J|1|14|A|2643
5M1J|1|14|C|2644
5M1J|1|14|G|2645

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain I5

60S ribosomal protein L10

Chain T5

60S ribosomal protein L21-A

Chain b5

60S ribosomal protein L29