3D structure

PDB id
5M1J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Nonstop ribosomal complex bound with Dom34 and Hbs1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
UUAAACGAUAACG
Length
13 nucleotides
Bulged bases
5M1J|1|14|A|2637, 5M1J|1|14|C|2644
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5M1J_056 not in the Motif Atlas
Homologous match to HL_5TBW_055
Geometric discrepancy: 0.0883
The information below is about HL_5TBW_055
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_19870.9
Basepair signature
cWW-tHH-cWW-tHS-F-F-tWW
Number of instances in this motif group
8

Unit IDs

5M1J|1|14|U|2633
5M1J|1|14|U|2634
5M1J|1|14|A|2635
5M1J|1|14|A|2636
5M1J|1|14|A|2637
5M1J|1|14|C|2638
5M1J|1|14|G|2639
5M1J|1|14|A|2640
5M1J|1|14|U|2641
5M1J|1|14|A|2642
5M1J|1|14|A|2643
5M1J|1|14|C|2644
5M1J|1|14|G|2645

Current chains

Chain 14
25S ribosomal RNA

Nearby chains

Chain I5
60S ribosomal protein L10
Chain T5
60S ribosomal protein L21-A
Chain b5
60S ribosomal protein L29

Coloring options:


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