HL_5M1J_059
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UUCAGUGUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5M1J_059 not in the Motif Atlas
- Homologous match to HL_8C3A_059
- Geometric discrepancy: 0.1263
- The information below is about HL_8C3A_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_34636.1
- Basepair signature
- cWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5M1J|1|14|U|2724
5M1J|1|14|U|2725
5M1J|1|14|C|2726
5M1J|1|14|A|2727
5M1J|1|14|G|2728
5M1J|1|14|U|2729
5M1J|1|14|G|2730
5M1J|1|14|U|2731
5M1J|1|14|G|2732
Current chains
- Chain 14
- 25S ribosomal RNA
Nearby chains
- Chain Q5
- 60S ribosomal protein L18-A
- Chain T5
- 60S ribosomal protein L21-A
- Chain a5
- 60S ribosomal protein L28
- Chain b5
- 60S ribosomal protein L29
- Chain o5
- 60S ribosomal protein L42-B
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