HL_5M1J_062

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_062 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.1402

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5M1J|1|14|C|2840
5M1J|1|14|G|2841
5M1J|1|14|U|2842
5M1J|1|14|U|2843
5M1J|1|14|C|2844
5M1J|1|14|A|2845
5M1J|1|14|U|2846
5M1J|1|14|A|2847
5M1J|1|14|G|2848

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain A1

Protein DOM34

Chain I5

60S ribosomal protein L10

Chain m5

Ubiquitin-60S ribosomal protein L40