HL_5M1J_070

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

5M1J|1|14|A|3243, 5M1J|1|14|A|3244

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_070 not in the Motif Atlas

Homologous match to HL_5TBW_069

Geometric discrepancy: 0.1145

The information below is about HL_5TBW_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24596.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

5M1J|1|14|C|3240
5M1J|1|14|G|3241
5M1J|1|14|G|3242
5M1J|1|14|A|3243
5M1J|1|14|A|3244
5M1J|1|14|A|3245
5M1J|1|14|G|3246
5M1J|1|14|G|3247

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain B5

60S ribosomal protein L3

Chain K5

60S ribosomal protein L16-A