HL_5M1J_075

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

5M1J|1|22|U|158, 5M1J|1|22|U|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_075 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.1632

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5M1J|1|22|G|154
5M1J|1|22|U|155
5M1J|1|22|A|156
5M1J|1|22|A|157
5M1J|1|22|U|158
5M1J|1|22|U|159
5M1J|1|22|C|160

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain G2

40S ribosomal protein S6-A

Chain Y2

40S ribosomal protein S24-A