HL_5M1J_079

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_079 not in the Motif Atlas

Geometric match to HL_5U30_001

Geometric discrepancy: 0.1999

The information below is about HL_5U30_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

5M1J|1|22|C|276
5M1J|1|22|U|277
5M1J|1|22|U|278
5M1J|1|22|G|279

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain W5

60S ribosomal protein L24-A