HL_5M1J_084

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

5M1J|1|22|A|452, 5M1J|1|22|U|454, 5M1J|1|22|C|455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_084 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.388

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5M1J|1|22|U|450
5M1J|1|22|A|451
5M1J|1|22|A|452
5M1J|1|22|U|453
5M1J|1|22|U|454
5M1J|1|22|C|455
5M1J|1|22|A|456

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain E2

40S ribosomal protein S4-A

Chain Y2

40S ribosomal protein S24-A