HL_5M1J_085

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

5M1J|1|22|U|493, 5M1J|1|22|U|494, 5M1J|1|22|C|495

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_085 not in the Motif Atlas

Homologous match to HL_4V88_198

Geometric discrepancy: 0.3291

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5M1J|1|22|C|491
5M1J|1|22|A|492
5M1J|1|22|U|493
5M1J|1|22|U|494
5M1J|1|22|C|495
5M1J|1|22|G|496

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain A6

Protein HBS1