HL_5M1J_087
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAGCCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5M1J_087 not in the Motif Atlas
- Homologous match to HL_4V88_200
- Geometric discrepancy: 0.1468
- The information below is about HL_4V88_200
- Detailed Annotation
- GNRA variation
- Broad Annotation
- GNRA variation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
5M1J|1|22|C|569
5M1J|1|22|A|570
5M1J|1|22|G|571
5M1J|1|22|C|572
5M1J|1|22|C|573
5M1J|1|22|G|574
Current chains
- Chain 22
- 18S ribosomal RNA
Nearby chains
- Chain A1
- Protein DOM34
- Chain X2
- 40S ribosomal protein S23-A
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