3D structure

PDB id
5M1J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Nonstop ribosomal complex bound with Dom34 and Hbs1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CAGCCG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5M1J_087 not in the Motif Atlas
Homologous match to HL_4V88_200
Geometric discrepancy: 0.1468
The information below is about HL_4V88_200
Detailed Annotation
GNRA variation
Broad Annotation
GNRA variation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

5M1J|1|22|C|569
5M1J|1|22|A|570
5M1J|1|22|G|571
5M1J|1|22|C|572
5M1J|1|22|C|573
5M1J|1|22|G|574

Current chains

Chain 22
18S ribosomal RNA

Nearby chains

Chain A1
Protein DOM34
Chain X2
40S ribosomal protein S23-A

Coloring options:


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