HL_5M1J_087

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_087 not in the Motif Atlas

Homologous match to HL_4V88_200

Geometric discrepancy: 0.1468

The information below is about HL_4V88_200

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5M1J|1|22|C|569
5M1J|1|22|A|570
5M1J|1|22|G|571
5M1J|1|22|C|572
5M1J|1|22|C|573
5M1J|1|22|G|574

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain A1

Protein DOM34

Chain X2

40S ribosomal protein S23-A