HL_5M1J_088

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGGCCGGUCGGAUUUCCA

Length

18 nucleotides

Bulged bases

5M1J|1|22|G|676

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_088 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3351

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

5M1J|1|22|U|650
5M1J|1|22|G|651
5M1J|1|22|G|652
5M1J|1|22|C|653
5M1J|1|22|C|654
5M1J|1|22|G|655
5M1J|1|22|G|656
5M1J|1|22|U|657
5M1J|1|22|C|658
5M1J|1|22|G|676
5M1J|1|22|G|677
5M1J|1|22|A|678
5M1J|1|22|U|679
5M1J|1|22|U|680
5M1J|1|22|U|681
5M1J|1|22|C|682
5M1J|1|22|C|683
5M1J|1|22|A|684

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain E2

40S ribosomal protein S4-A

Chain J2

40S ribosomal protein S9-A