HL_5M1J_093
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5M1J_093 not in the Motif Atlas
- Homologous match to HL_4V88_206
- Geometric discrepancy: 0.1456
- The information below is about HL_4V88_206
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
5M1J|1|22|A|900
5M1J|1|22|G|901
5M1J|1|22|G|902
5M1J|1|22|U|903
5M1J|1|22|G|904
5M1J|1|22|A|905
5M1J|1|22|A|906
5M1J|1|22|A|907
5M1J|1|22|U|908
5M1J|1|22|U|909
Current chains
- Chain 22
- 18S ribosomal RNA
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain F2
- 40S ribosomal protein S5
- Chain O2
- 40S ribosomal protein S14-A
- Chain X7
- nonstop mRNA
- Chain a2
- 40S ribosomal protein S26-B
- Chain c2
- 40S ribosomal protein S28-B
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