HL_5M1J_104

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_104 not in the Motif Atlas

Geometric match to HL_5J7L_014

Geometric discrepancy: 0.3129

The information below is about HL_5J7L_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5M1J|1|22|U|1396
5M1J|1|22|U|1397
5M1J|1|22|U|1398
5M1J|1|22|C|1399
5M1J|1|22|A|1400
5M1J|1|22|A|1401
5M1J|1|22|G|1402

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain R2

40S ribosomal protein S17-B