HL_5M1J_110
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UUCCCGUCCGAUCA
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5M1J_110 not in the Motif Atlas
- Homologous match to HL_8C3A_228
- Geometric discrepancy: 0.1429
- The information below is about HL_8C3A_228
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50688.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
5M1J|1|34|U|32
5M1J|1|34|U|33
5M1J|1|34|C|34
5M1J|1|34|C|35
5M1J|1|34|C|36
5M1J|1|34|G|37
5M1J|1|34|U|38
5M1J|1|34|C|39
5M1J|1|34|C|40
5M1J|1|34|G|41
5M1J|1|34|A|42
5M1J|1|34|U|43
5M1J|1|34|C|44
5M1J|1|34|A|45
Current chains
- Chain 34
- 5S ribosomal RNA
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain D5
- 60S ribosomal protein L5
- Chain J5
- 60S ribosomal protein L11-A
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