HL_5M1J_115

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAG(H2U)(H2U)GGGAG

Length

10 nucleotides

Bulged bases

5M1J|1|A3|G|18, 5M1J|1|A3|G|19, 5M1J|1|A3|G|20

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_115 not in the Motif Atlas

Homologous match to HL_6PMO_003

Geometric discrepancy: 0.1355

The information below is about HL_6PMO_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5M1J|1|A3|C|13
5M1J|1|A3|A|14
5M1J|1|A3|G|15
5M1J|1|A3|H2U|16
5M1J|1|A3|H2U|17
5M1J|1|A3|G|18
5M1J|1|A3|G|19
5M1J|1|A3|G|20
5M1J|1|A3|A|21
5M1J|1|A3|G|22

Current chains

Chain A3

yeast Phe-tRNA-Phe

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain J5

60S ribosomal protein L11-A

Chain o5

60S ribosomal protein L42-B