HL_5MC6_031

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGCAUUUGCU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MC6_031 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3745

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

5MC6|1|2|A|1357
5MC6|1|2|G|1358
5MC6|1|2|C|1359
5MC6|1|2|A|1360
5MC6|1|2|U|1361
5MC6|1|2|U|1362
5MC6|1|2|U|1363
5MC6|1|2|G|1364
5MC6|1|2|C|1365
5MC6|1|2|U|1366

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S5

Chain F

40S ribosomal protein S16-A

Chain I

40S ribosomal protein S19-A