HL_5MC6_036

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUAGAGAUCUCAGA

Length

14 nucleotides

Bulged bases

5MC6|1|2|U|1708, 5MC6|1|2|C|1709, 5MC6|1|2|U|1710, 5MC6|1|2|C|1711

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MC6_036 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3245

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

5MC6|1|2|U|1687
5MC6|1|2|U|1688
5MC6|1|2|A|1689
5MC6|1|2|G|1690
5MC6|1|2|A|1691
5MC6|1|2|G|1692
5MC6|1|2|A|1693
5MC6|1|2|U|1708
5MC6|1|2|C|1709
5MC6|1|2|U|1710
5MC6|1|2|C|1711
5MC6|1|2|A|1712
5MC6|1|2|G|1713
5MC6|1|2|A|1714

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L24-A

Chain T

40S ribosomal protein S6-A