HL_5MC6_046
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGUAAAUUCC
- Length
- 10 nucleotides
- Bulged bases
- 5MC6|1|BQ|G|304, 5MC6|1|BQ|U|305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MC6_046 not in the Motif Atlas
- Geometric match to HL_4QLM_002
- Geometric discrepancy: 0.3131
- The information below is about HL_4QLM_002
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_00911.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
5MC6|1|BQ|G|303
5MC6|1|BQ|G|304
5MC6|1|BQ|U|305
5MC6|1|BQ|A|306
5MC6|1|BQ|A|307
5MC6|1|BQ|A|308
5MC6|1|BQ|U|309
5MC6|1|BQ|U|310
5MC6|1|BQ|C|311
5MC6|1|BQ|C|312
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AC
- 60S ribosomal protein L36-A
- Chain AJ
- 60S ribosomal protein L13-A
- Chain AP
- 60S ribosomal protein L42-A
- Chain AQ
- 60S ribosomal protein L15-A
- Chain AR
- 60S ribosomal protein L28
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