HL_5MC6_051

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

5MC6|1|BQ|C|648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MC6_051 not in the Motif Atlas

Homologous match to HL_5TBW_014

Geometric discrepancy: 0.1334

The information below is about HL_5TBW_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

5MC6|1|BQ|U|640
5MC6|1|BQ|C|641
5MC6|1|BQ|U|642
5MC6|1|BQ|U|643
5MC6|1|BQ|G|644
5MC6|1|BQ|A|645
5MC6|1|BQ|A|646
5MC6|1|BQ|A|647
5MC6|1|BQ|C|648
5MC6|1|BQ|A|649

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AR

60S ribosomal protein L28

Chain BA

60S ribosomal protein L3

Chain BG

60S ribosomal protein L32