HL_5MC6_055

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUCUUC

Length

6 nucleotides

Bulged bases

5MC6|1|BQ|C|765

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MC6_055 not in the Motif Atlas

Homologous match to HL_5TBW_018

Geometric discrepancy: 0.2549

The information below is about HL_5TBW_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

5MC6|1|BQ|G|763
5MC6|1|BQ|U|764
5MC6|1|BQ|C|765
5MC6|1|BQ|U|766
5MC6|1|BQ|U|767
5MC6|1|BQ|C|768

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AJ

60S ribosomal protein L13-A