HL_5MC6_058

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

5MC6|1|BQ|A|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MC6_058 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.1038

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5MC6|1|BQ|G|910
5MC6|1|BQ|C|911
5MC6|1|BQ|G|912
5MC6|1|BQ|A|913
5MC6|1|BQ|A|914
5MC6|1|BQ|A|915
5MC6|1|BQ|G|916
5MC6|1|BQ|A|917
5MC6|1|BQ|C|918

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AF

60S ribosomal protein L37-A

Chain AQ

60S ribosomal protein L15-A

Chain AW

60S ribosomal protein L2-A