HL_5MC6_068

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MC6_068 not in the Motif Atlas

Homologous match to HL_5TBW_031

Geometric discrepancy: 0.1404

The information below is about HL_5TBW_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

5MC6|1|BQ|A|1462
5MC6|1|BQ|U|1463
5MC6|1|BQ|G|1464
5MC6|1|BQ|A|1465
5MC6|1|BQ|G|1466
5MC6|1|BQ|A|1467
5MC6|1|BQ|A|1468
5MC6|1|BQ|C|1469
5MC6|1|BQ|U|1470

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AX

60S ribosomal protein L17-A

Chain BC

60S ribosomal protein L31-A

Chain BF

60S ribosomal protein L19-A