HL_5MC6_076

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACCUUU

Length

6 nucleotides

Bulged bases

5MC6|1|BQ|C|1762

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MC6_076 not in the Motif Atlas

Homologous match to HL_5TBW_039

Geometric discrepancy: 0.4748

The information below is about HL_5TBW_039

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_61202.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

1

Unit IDs

5MC6|1|BQ|A|1760
5MC6|1|BQ|C|1761
5MC6|1|BQ|C|1762
5MC6|1|BQ|U|1763
5MC6|1|BQ|U|1764
5MC6|1|BQ|U|1765

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain BF

60S ribosomal protein L19-A