HL_5MC6_098
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGGAAUUUG
- Length
- 9 nucleotides
- Bulged bases
- 5MC6|1|BQ|G|2777
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MC6_098 not in the Motif Atlas
- Homologous match to HL_8C3A_061
- Geometric discrepancy: 0.104
- The information below is about HL_8C3A_061
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
5MC6|1|BQ|C|2776
5MC6|1|BQ|G|2777
5MC6|1|BQ|G|2778
5MC6|1|BQ|A|2779
5MC6|1|BQ|A|2780
5MC6|1|BQ|U|2781
5MC6|1|BQ|U|2782
5MC6|1|BQ|U|2783
5MC6|1|BQ|G|2784
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AC
- 60S ribosomal protein L36-A
- Chain AJ
- 60S ribosomal protein L13-A
- Chain AP
- 60S ribosomal protein L42-A
- Chain AR
- 60S ribosomal protein L28
Coloring options: