HL_5MC6_115

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAGUUGGUAG

Length

10 nucleotides

Bulged bases

5MC6|1|m|U|16, 5MC6|1|m|U|17, 5MC6|1|m|G|18, 5MC6|1|m|G|19, 5MC6|1|m|U|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MC6_115 not in the Motif Atlas

Homologous match to HL_6PMO_003

Geometric discrepancy: 0.2856

The information below is about HL_6PMO_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MC6|1|m|C|13
5MC6|1|m|A|14
5MC6|1|m|G|15
5MC6|1|m|U|16
5MC6|1|m|U|17
5MC6|1|m|G|18
5MC6|1|m|G|19
5MC6|1|m|U|20
5MC6|1|m|A|21
5MC6|1|m|G|22

Current chains

Chain m

A-site tRNA

Nearby chains

Chain BQ

Large subunit ribosomal RNA; LSU rRNA

Chain n

Transfer RNA; tRNA